AASequenceList-class: Class "AASequenceList" - Container

In wolski/pairseqsim: pairwise sequence alignment similarity simple.

Description

Container for objects of calss AASequence. The AASequences in the list can be accessed and manipulated like normal list elements.

Objects from the Class

Objects can be created by calls of the form new("AASequenceList", ...).

Slots

.Data:

Object of class "list" : list of AASequence objects.

info:

Object of class "character" : info character

Extends

Class "list", directly.

Methods

[

signature(x = "AASequenceList"): create subset AASequenceList

[[<-

signature(x = "AASequenceList"): assign AASequence

[<-

signature(x = "AASequenceList"): replace subset of AASequenceList

readFasta

signature(object = "AASequenceList"): read file in FASTA format.

salign

signature(obj1 = "AASequenceList", obj2 = "NULL"): see: salign

salign

signature(obj1 = "AASequenceList", obj2 = "AASequence"): see: salign

salign

signature(obj1 = "AASequence", obj2 = "AASequenceList"): see: salign

Author(s)

Wolski E. Witold [e-mail]

References

http://users.sourceforge.net

See Also

salign-methods, or readFasta-methods

Examples

data(sequlist)
sequlist[1:2]
sequlist[[1]]
sequlist[1:2]<-sequlist[3:4]

wolski/pairseqsim documentation built on May 4, 2019, 9:47 a.m.