scPlotNucleosomeQC: Plot Nucleosome signal enrichment

In wzthu/ATACFlow: An Easy-to-use Systematic pipeline for ATACseq data analysis

Plot Nucleosome signal enrichment

Description

Plot Nucleosome signal enrichment

Usage

scPlotNucleosomeQC(
  fragment = NULL,
  nsQC = NULL,
  region = "chr1-1-2000000",
  threshold = 4,
  log.scale = FALSE
)

Arguments

fragment	a fragment object.
nsQC	Nucleosome QC information from function 'scNucleosomeQC'
region	Genome region, like "chr1-1-2000000"
threshold	Threshold to separate low and high quality cells
log.scale	plot in log scale or not.

Details

Plot the normalized Nucleosome signal enrichment score.

Value

Returns a ggplot2 object

wzthu/ATACFlow documentation built on Aug. 9, 2022, 2:24 a.m.