capacityPlot.homoVAR.fn: Display assay capacity

In xhdouglas/HTScapacity: An R package for analyzing assay capacity in HTS studies

Description

a function to plot density and simulated values of measured response to demonstrate FoldHit under homoscedasticity for two groups excluding NA values

Usage

capacityPlot.homoVAR.fn(
  FoldHit,
  color = c("green", "black", "red", "purple"),
  pch = 1:4,
  xRange = NULL,
  yRange = NULL,
  normCut = 3,
  nPointSim = 400,
  length.out = 1000,
  round.point = 2,
  lwd = 3,
  mar = c(8.1, 4.1, 1.1, 1.1),
  lineScale = c(0.9, 3.7, 6.4),
  lineXaxis = c(0, 2.8, 5.5)
)

Arguments

FoldHit	a vector of FoldHit values for controls, the first element must be 0, the second element must be 1 or -1, the remainings are for positive controls
color	colors mark negative reference, MDhit and positive controls
pch	point types mark negative reference, MDhit and positive controls
xRange	range for x-axis
yRange	range for y-axis
normCut	SSMD value for defining a maximally detectable hit
nPointSim	number of points to be simulated for generating a density
length.out	number of points for showing density
round.point	number of round points for showing capacity values
lwd	width of density lines
mar	margin for the plot
lineScale	value of line in showing scale
lineXaxis:	value of line in showing labels in x-axis

Value

no return value

Author(s)

Xiaohua Douglas Zhang 06/2020

Examples

  FoldHit = c(0, -1, -4.308057, -1.674495)
  par(mfrow=c(1,2))
  capacityPlot.homoVAR.fn( FoldHit, color=c("green","black","red", "purple"))
  capacityPlot.homoVAR.fn( -FoldHit, color=c("green","black","red", "purple"))

xhdouglas/HTScapacity documentation built on Dec. 10, 2020, 8:20 p.m.