capacityPlot.homoVAR.simple.fn: Display assay capacity briefly

In xhdouglas/HTScapacity: An R package for analyzing assay capacity in HTS studies

Description

a function to plot density of measured value to demonstrate FoldHit under homoscedasticity for two groups excluding NA values

Usage

capacityPlot.homoVAR.simple.fn(
  FoldHit,
  color = c("green", "black", "red", "purple"),
  xRange = NULL,
  yRange = NULL,
  normCut = 3,
  length.out = 1000,
  round.point = 2,
  lwd = 3,
  mar = c(8.1, 4.1, 1.1, 1.1),
  lineScale = c(0.9, 3.7, 6.4),
  lineXaxis = c(0, 2.8, 5.5)
)

Arguments

FoldHit	a vector of FoldHit values for controls, the first element must be 0, the second element must be 1 or -1, the remainings are for positive controls
color	colors mark negative reference, MDhit and positive controls
xRange	range for x-axis
yRange	range for y-axis
normCut	SSMD value for defining a maximally detectable hit
length.out	number of points for showing density
round.point	number of round points for showing capacity values
lwd	width of density lines
mar	margin for the plot
lineScale	value of line in showing scale
lineXaxis:	value of line in showing labels in x-axis

Value

no return value

Author(s)

Xiaohua Douglas Zhang 05/2020

Examples

FoldHit = c(0, -1, -4.308057, -1.674495)
  par(mfrow=c(1,2))
  capacityPlot.homoVAR.simple.fn( FoldHit, color=c("green","black","red", "purple"))
  capacityPlot.homoVAR.simple.fn( -FoldHit, color=c("green","black","red", "purple"))

xhdouglas/HTScapacity documentation built on Dec. 10, 2020, 8:20 p.m.