MetaboliteMappingExact: Mapping from different metabolite IDs

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

Mapping from different metabolite IDs

Description

For compound names to other ids, can do exact or approximate matches For other IDs, except HMDB ID, all others may return multiple/non-unique hits Multiple hits or non-unique hits will allow users to manually select

Usage

MetaboliteMappingExact(mSetObj = NA, q.type, lipid = F)

Arguments

mSetObj	Input the name of the created mSetObj.
q.type	Inpute the query-type, "name" for compound names, "hmdb" for HMDB IDs, "kegg" for KEGG IDs, "pubchem" for PubChem CIDs, "chebi" for ChEBI IDs, "metlin" for METLIN IDs, and "hmdb_kegg" for a both KEGG and HMDB IDs.
lipid	Boolean, if features are lipids, a different database will be used for compound matching.

Author(s)

Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.