SetPeakParam: SetPeakParam

In xia-lab/MetaboAnalystR: An R Package for Comprehensive Analysis of Metabolomics Data

SetPeakParam

Description

SetPeakParam, used to set the peak param

Usage

SetPeakParam(
  platform = "general",
  Peak_method = "centWave",
  RT_method = "loess",
  mzdiff,
  snthresh,
  bw,
  ppm,
  min_peakwidth,
  max_peakwidth,
  noise,
  prefilter,
  value_of_prefilter,
  fwhm,
  steps,
  sigma,
  peakBinSize,
  max,
  criticalValue,
  consecMissedLimit,
  unions,
  checkBack,
  withWave,
  profStep,
  minFraction,
  minSamples,
  maxFeatures,
  mzCenterFun,
  integrate,
  extra,
  span,
  smooth,
  family,
  fitgauss,
  polarity,
  perc_fwhm,
  mz_abs_iso,
  max_charge,
  max_iso,
  corr_eic_th,
  mz_abs_add,
  adducts,
  rmConts,
  BlankSub
)

Arguments

platform	platform
Peak_method	Peak_method
RT_method	RT_method
mzdiff	mzdiff
snthresh	snthresh
bw	bw
ppm	ppm
min_peakwidth	min_peakwidth
max_peakwidth	max_peakwidth
noise	noise
prefilter	prefilter
value_of_prefilter	value_of_prefilter
fwhm	fwhm
steps	steps
sigma	sigma
peakBinSize	peakBinSize
max	max
criticalValue	criticalValue
consecMissedLimit	consecMissedLimit
unions	unions
checkBack	checkBack
withWave	withWave
profStep	profStep
minFraction	minFraction
minSamples	minSamples
maxFeatures	maxFeatures
mzCenterFun	mzCenterFun
integrate	integrate
extra	extra
span	span
smooth	smooth
family	family
fitgauss	fitgauss
polarity	polarity
perc_fwhm	perc_fwhm
mz_abs_iso	mz_abs_iso
max_charge	max_charge
max_iso	max_iso
corr_eic_th	corr_eic_th
mz_abs_add	mz_abs_add
adducts	adducts
rmConts	rmConts

Author(s)

Zhiqiang Pang

xia-lab/MetaboAnalystR documentation built on Dec. 23, 2024, 3:44 p.m.