CreateMummichogLibs: Create Mummichog Libraries from KEGG
In xia-lab/MetaboAnalystR3.0: An R Package for Comprehensive Analysis of Metabolomics Data
Description
Function to create mummichog libraries from
MetaboAnalyst pathway libraries (metpa).
Outputs the RDS files in the current working directory. RDS files
are saved using the KEGG organism code.
Usage
1
CreateMummichogLibs("~/Desktop/MetaboAnalyst/mummichog/2020_mummichog_libs/test", kegg_compounds_2020)
Arguments
folder
Input the path of the folder containing the metpa rda files.
kegg_compounds
Input the name of the KEGG dictionary containing the
KEGG compound IDs, KEGG compopund names, and molecular weight.
xia-lab/MetaboAnalystR3.0 documentation built on May 6, 2020, 11:03 p.m.
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Description
Function to create mummichog libraries from MetaboAnalyst pathway libraries (metpa). Outputs the RDS files in the current working directory. RDS files are saved using the KEGG organism code.
Usage
1 | CreateMummichogLibs("~/Desktop/MetaboAnalyst/mummichog/2020_mummichog_libs/test", kegg_compounds_2020)
|
Arguments
folder |
Input the path of the folder containing the metpa rda files. |
kegg_compounds |
Input the name of the KEGG dictionary containing the KEGG compound IDs, KEGG compopund names, and molecular weight. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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