Function to create mummichog libraries from MetaboAnalyst pathway libraries (metpa). Outputs the RDS files in the current working directory. RDS files are saved using the KEGG organism code.
1 | CreateMummichogLibs("~/Desktop/MetaboAnalyst/mummichog/2020_mummichog_libs/test", kegg_compounds_2020)
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folder |
Input the path of the folder containing the metpa rda files. |
kegg_compounds |
Input the name of the KEGG dictionary containing the KEGG compound IDs, KEGG compopund names, and molecular weight. |
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