Description Usage Arguments Author(s)
View source: R/enrich_name_match.R
Given a list of compound names or ids find matched name or IDs from selected databases
1 2 3 4 5 6 7 8 9 | CrossReferencing(
mSetObj = NA,
q.type,
hmdb = T,
pubchem = T,
chebi = F,
kegg = T,
metlin = F
)
|
mSetObj |
Input the name of the created mSetObj (see InitDataObjects). |
q.type |
Input the query type, "name" for compound names, "hmdb" for HMDB IDs, "kegg" for KEGG IDs, "pubchem" for PubChem CIDs, "chebi" for ChEBI IDs, "metlin" for METLIN IDs, and "hmdb_kegg" for a both KEGG and HMDB IDs. |
hmdb |
Logical, T to cross reference to HMDB, F to not. |
pubchem |
Logical, T to cross reference to PubChem, F to not. |
chebi |
Logical, T to cross reference to CheBI, F to not. |
kegg |
Logical, T to cross reference to KEGG, F to not. |
metlin |
Logical, T to cross reference to MetLin, F to not. |
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.