Description Usage Arguments Author(s)
View source: R/others_batch_check.R
One is a batch containing summed concentrations of each sample the other contains the features aligned across all samples
1 2 3 4 5 6 | PerformBatchCorrection(
mSetObj = NA,
imgName = NULL,
Method = NULL,
center = NULL
)
|
mSetObj |
Input name of the created mSet Object |
imgName |
Input the name of the plot to create |
Method |
Batch effect correction method, default is "Automatically". Specific method, including "Combat", "WaveICA","EigenMS","QC_RLSC","ANCOVA","RUV_random","RUV_2","RUV_s","RUV_r","RUV_g","NOMIS" and "CCMN". |
center |
The center point of the batch effect correction, based on "QC" or "", which means correct to minimize the distance between batches. |
Zhiqiang Pang, Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
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