PerformBatchCorrection: Batch Effect Correction

In xia-lab/MetaboAnalystR3.0: An R Package for Comprehensive Analysis of Metabolomics Data

Description

One is a batch containing summed concentrations of each sample the other contains the features aligned across all samples

Usage

PerformBatchCorrection(
  mSetObj = NA,
  imgName = NULL,
  Method = NULL,
  center = NULL
)

Arguments

mSetObj	Input name of the created mSet Object
imgName	Input the name of the plot to create
Method	Batch effect correction method, default is "Automatically". Specific method, including "Combat", "WaveICA","EigenMS","QC_RLSC","ANCOVA","RUV_random","RUV_2","RUV_s","RUV_r","RUV_g","NOMIS" and "CCMN".
center	The center point of the batch effect correction, based on "QC" or "", which means correct to minimize the distance between batches.

Author(s)

Zhiqiang Pang, Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR3.0 documentation built on May 6, 2020, 11:03 p.m.