Description Usage Arguments Author(s)
View source: R/stats_correlations.R
Plot correlation heatmap
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mSetObj |
Input name of the created mSet Object. |
imgName |
Input the name of the image to create |
format |
Select the image format, "png", or "pdf". |
dpi |
Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300. |
width |
Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width. |
target |
Input "row" to select features, or "col" to select samples. |
cor.method |
Indicate the correlation method, 'pearson', 'spearman', or 'kendall'. |
colors |
Indicate the colors for the heatmap, "bwm" for default, "gbr" for red/green, "heat" for heat colors, "topo" for topo colors, and "gray" for gray scale. |
viewOpt |
Indicate "overview" to get an overview of the heatmap, and "detail" to get a detailed view of the heatmap. |
fix.col |
Logical, fix colors (TRUE) or not (FALSE). |
no.clst |
Logical, indicate if the correlations should be clustered (TRUE) or not (FALSE). |
top |
View top |
topNum |
Numeric, view top McGill University, Canada License: GNU GPL (>= 2) |
Jeff Xiajeff.xia@mcgill.ca
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