Description Usage Arguments Author(s)
View source: R/stats_clustering.R
Plot a heatmap based on results from t-tests/ANOVA, VIP or randomforest
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mSetObj |
Input name of the created mSet Object |
imgName |
Input a name for the plot |
format |
Select the image format, "png", or "pdf". |
dpi |
Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300. |
width |
Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width. |
dataOpt |
Set data options |
scaleOpt |
Set the image scale |
smplDist |
Input the sample distance method |
clstDist |
Input the clustering distance method |
palette |
Input color palette choice |
viewOpt |
Set heatmap options, default is set to "detail" |
rowV |
Default is set to T |
colV |
Default is set to T |
var.inx |
Default is set to NA |
border |
Indicate whether or not to show cell-borders, default is set to T |
grp.ave |
Logical, default is set to F |
Jeff Xiajeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
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