Description Usage Arguments Author(s)
View source: R/time_asca_heatmap2.R
Plot heatmap visualization for time-series data
1 |
mSetObj |
Input the name of the created mSetObj (see InitDataObjects) |
imgName |
Input a name for the plot |
format |
Select the image format, "png", or "pdf". |
dpi |
Input the dpi. If the image format is "pdf", users need not define the dpi. For "png" images, the default dpi is 72. It is suggested that for high-resolution images, select a dpi of 300. |
width |
Input the width, there are 2 default widths, the first, width = NULL, is 10.5. The second default is width = 0, where the width is 7.2. Otherwise users can input their own width. |
smplDist |
Select distance measure: euclidean, pearson, or minkowski |
clstDist |
Select clustering algorithm: ward, average, complete, single |
colors |
Select heatmap colors: bwm, gray |
viewOpt |
Select overview or detailed view: overview or detail |
hiRes |
Select high-resolution or not: logical, default set to F |
sortInx |
Sort by index |
useSigFeature |
Use significant features only: F or T (default false) |
drawBorder |
Show cell borders: F or T (default F) |
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
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