Statistic_doe: Analyze DoE Result

In xia-lab/MetaboAnalystR3.0: An R Package for Comprehensive Analysis of Metabolomics Data

Description

Analyze DoE Result

Usage

Statistic_doe(
  object,
  object_mslevel,
  isotopeIdentification,
  BPPARAM = bpparam(),
  mSet_OPT,
  subdir = NULL,
  plot = F,
  iterator,
  index.set,
  useNoise
)

Arguments

object	MSnExp object, the trimmed or the original data.
object_mslevel	List, the parsed metabolomics scans produced by PeakPicking_prep.
isotopeIdentification	Character, IsotopeIdentidication method, usually includes 'IPO' and 'CAMERA'.
BPPARAM	MulticoreParam method, used to set the parallel method. Default is bpparam().
mSet_OPT	List, the result produced by 'ExperimentsCluster'.
subdir	Logical, weather to creat a sub-directory (if true) or not (if false).
plot	Logical, weather to plot the Contours plots of the DoE results.
iterator	Numeric, the round number of the DoE.
index.set	List, the indexes set (including PPS, CV, RCS, GS and Gaussian Index) produced by ExperiemntCluster.
useNoise	Numeric, the noise level removed to evalute the gaussian peak.

Author(s)

Zhiqiang Pang [e-mail] Jeff Xia [e-mail] Mcgill University License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR3.0 documentation built on May 6, 2020, 11:03 p.m.