optimizxcms.doe.peakpicking: Core Optimization Function of DoE

In xia-lab/MetaboAnalystR3.0: An R Package for Comprehensive Analysis of Metabolomics Data

Description

This function is the core for parameters optimization with Design of Experiment (DoE) method.

Usage

optimizxcms.doe.peakpicking(
  object = NULL,
  params = params,
  BPPARAM = bpparam(),
  nSlaves = 4,
  plot = F,
  ...
)

Arguments

BPPARAM	MulticoreParam method, used to set the parallel method. Default is bpparam().
plot	Logical, weather to plot the Contours plots of the DoE results.
objet	MSnExp object, the trimmed or the original data.
param	List, the parameters lists set by 'SetPeakParam' function. The noise, prefilter and ppm values should be defined by AutoTuner in the previous steps.
nSlave	Numeric, core number used to perform the parallel based optimization.

Author(s)

Zhiqiang Pang [e-mail] Jeff Xia [e-mail] Mcgill University License: GNU GPL (>= 2)

xia-lab/MetaboAnalystR3.0 documentation built on May 6, 2020, 11:03 p.m.