Files in xihaoli/STAAR

STAAR Procedure for Dynamic Incorporation of Multiple Functional Annotations in Whole-Genome Sequencing Studies

.Rbuildignore

.github/workflows/R-CMD-check.yaml

.gitignore

.travis.yml

DESCRIPTION

LICENSE.md

NAMESPACE

R/CCT.R R/Indiv_Score_Test_Region.R R/Indiv_Score_Test_Region_cond.R R/RcppExports.R R/STAAR.R R/STAAR_Binary_SPA.R R/STAAR_cond.R R/fit_null_glm.R R/fit_null_glm_Binary_SPA.R R/fit_null_glmmkin.R R/fit_null_glmmkin_Binary_SPA.R README.md

STAAR.Rproj

appveyor.yml

data/example.rda

docs/STAAR_manual.pdf

docs/STAAR_vignette.html

docs/STAAR_workflow.png

inst/include/STAAR.h

inst/include/STAAR_RcppExports.h

man/CCT.Rd man/Indiv_Score_Test_Region.Rd man/Indiv_Score_Test_Region_cond.Rd man/STAAR.Rd man/STAAR_Binary_SPA.Rd man/STAAR_cond.Rd man/fit_null_glm.Rd man/fit_null_glm_Binary_SPA.Rd man/fit_null_glmmkin.Rd man/fit_null_glmmkin_Binary_SPA.Rd

src/Bisection.cpp

src/Bisection_Binary_SPA.cpp

src/CCT_pval.cpp

src/Indiv_Score_Test.cpp

src/Indiv_Score_Test_SMMAT.cpp

src/Indiv_Score_Test_SMMAT_sparse.cpp

src/Indiv_Score_Test_SMMAT_sparse_cond.cpp

src/K.cpp

src/K1.cpp

src/K1_Binary_SPA.cpp

src/K1_Binary_SPA_alt.cpp

src/K2.cpp

src/K2_Binary_SPA.cpp

src/K2_Binary_SPA_alt.cpp

src/K_Binary_SPA.cpp

src/K_Binary_SPA_alt.cpp

src/Makevars

src/Makevars.win

src/NR_Binary_SPA.cpp

src/RcppExports.cpp

src/STAAR_B_Binary_SPA.cpp

src/STAAR_B_SPA.cpp

src/STAAR_B_SPA_SMMAT.cpp

src/STAAR_B_SPA_SMMAT_sparse.cpp

src/STAAR_O.cpp

src/STAAR_O_SMMAT.cpp

src/STAAR_O_SMMAT_sparse.cpp

src/STAAR_O_SMMAT_sparse_cond.cpp

src/Saddle.cpp

src/Saddle_Binary_SPA.cpp

src/Saddle_Binary_SPA_Bisection.cpp

src/check_is_na.cpp

src/goldenSectionSearchForSignChange.cpp

src/haveSameSign.cpp

src/matrix_flip.cpp

src/matrix_impute.cpp

xihaoli/STAAR documentation built on Jan. 27, 2024, 8:51 a.m.