Files in xinnyuY/EvoSig
Evolutionary dynamics signature extraction
.Rbuildignore
.gitignore
DESCRIPTION
EvoSig.Rproj
Extract_signature.Rmd
LICENSE
NAMESPACE
R/Wrap_up.R
R/help_function.R
R/main_function.R
data/ICGCtypefile.rda
data/TCGAtypefile.rda
data/datalist
data/immune_landscape_measure.rda
inst/extdata/TCGA_cancertype.csv
inst/extdata/immune_landscape_measure.RData
inst/extdata/sample_signature_cosmic.RData
man/Build_post_summary.Rd
man/EvoSig_input.Rd
man/Extract_sig.Rd
man/ParseSnvCnaPcawgFormat.Rd
man/TCGAtypefile.Rd
man/ccfMatBuild.Rd
man/ccfMatrixBuild.Rd
man/combine_sig_nmf.Rd
man/cor.table.Rd
man/cor_facet.Rd
man/file_format.Rd
man/hc_cluster_test-ccfMat-ccf-matrix-for-all-samples.Rd
man/hc_combine_sig-Combine-signatures-and-estimate-number-of-clusters.Rd
man/hc_consensus-ccfMat-ccf-matrix-for-all-samples.Rd
man/immune_landscape_measure.Rd
man/load_ccf.Rd
man/multi.dir.create.Rd
man/nmf_sig_all_plot.Rd
man/nmf_sig_plot_type.Rd
man/rank_estimate_plot.Rd
man/scatter_facet.Rd
man/sig_plot.Rd
man/strip_color.Rd
type_summary_x100_n30.csv
