ccfMatrixBuild: Build count matrix for input samples per cancer type

In xinnyuY/EvoSig: Evolutionary dynamics signature extraction

Build count matrix for input samples per cancer type

Description

Build count matrix for input samples per cancer type

Usage

ccfMatBuild_output(
  post_summary,
  input_folder,
  output = NA,
  ccfupper = 1,
  RankEstimateType = "fraction",
  add_samplename = TRUE,
  minsample = 30
)

Arguments

post_summary	samples' name
input_folder	folder path stores ccf files
output	output folder path
ccfupper	set CCF upper bound
RankEstimateType	output rank estimate matirx format
genelist	specify whether to only count for certain genes

Value

CCF matrix for each cancer type

xinnyuY/EvoSig documentation built on July 22, 2022, 9:43 p.m.