ccfMatBuild: Build CCF Matrix for all samples within region 0-upper

In xinnyuY/EvoSig: Evolutionary dynamics signature extraction

Build CCF Matrix for all samples within region 0-upper

Description

Build CCF Matrix for all samples within region 0-upper

Usage

ccfMatBuild(
  samplelist,
  upper,
  input_folder,
  binwidth = 0.01,
  add_samplename = FALSE,
  plot = FALSE,
  random = FALSE
)

Arguments

samplelist	samples' nam+e
upper	set CCF upper bound
input_folder	folder path stores ccf files
binwidth	ccf bin width
add_samplename	specify whether to add samplename variables
plot	whether to plot mutation distribution for samples
random	whether to output randomized ccf count matrix
genelist	specify whether to only count for certain genes

Value

A list containing ccfBandCountsMat,ccfBandCountsMat.random,ccfBandFractionMat and ccfBandFractionMat.random

xinnyuY/EvoSig documentation built on July 22, 2022, 9:43 p.m.