hc_combine_sig-Combine-signatures-and-estimate-number-of-clusters: Combine signatures and estimate number of clusters

In xinnyuY/EvoSig: Evolutionary dynamics signature extraction

Combine signatures and estimate number of clusters

Description

Combine signatures and estimate number of clusters

Usage

hc_combine_sig(
  input_folder,
  output_folder,
  cancertype,
  min.nc = 3,
  max.nc = 10,
  method = "ward.D2",
  index = "hubert",
  distance = "euclidean"
)

Arguments

input_folder	input folder
output_folder	output folder path
cancertype	cancer types
min.nc	minimum cluster
max.nc	maximum cluster
distance	distance function
ccfMatrix	ccf matrix for all samples

Value

list(combine_sig,cluster)

xinnyuY/EvoSig documentation built on July 22, 2022, 9:43 p.m.