Man pages for xu-chang/patchwork-lite
Allele-specific Copy Number Analysis of whole genome data
| karyotype | karyotype plotting function |
| karyotype_check | Karyotype check function |
| karyotype_chroms | Karyotype plotting of each chromosome |
| karyotype_chromsCN | Karyotype plotting for each chromosome post... |
| patchwork.alleledata | patchwork alleledata function |
| patchwork.applyref | Apply reference to query data |
| patchwork.copynumbers | Function plot allele-specific copy numbers of the genome |
| patchwork.createreference | Patchwork function to create your own normal reference file. |
| patchwork.GCNorm | patchwork GC normalizing function |
| patchwork.Medians_n_AI | patchwork function which computes medians and allelec... |
| patchwork.plot | Patchwork main function |
| patchwork.readChroms | patchwork function to read chromosomes into R |
| patchwork.region | Detailed view of a selected regions of the genome. |
| patchwork.segment | patchwork segmentation function |
| patchwork.smoothing | patchwork smoothing function |
| subfunctions_copynumbers | A number of subfunctions used within patchwork.copynumbers(). |
| zzz | Welcome to patchwork |
