patchwork.applyref: Apply reference to query data

In xu-chang/patchwork-lite: Allele-specific Copy Number Analysis of whole genome data

Description

Applies reference data depending on the sequencing type of the data.

Usage

patchwork.applyref(data,reference)

Arguments

data	The data object generated from patchwork.GCNorm().
reference	Path to a reference file that you have either downloaded from us or created yourself with patchwork.createreference().

Details

This function applies a normal reference from Solexa (Illumina), SOLiD or a reference that you have created for the data.

Author(s)

Markus Mayrhofer, [e-mail] Sebastian DiLorenzo, [e-mail]

See Also

patchwork.plot
patchwork.createreference

xu-chang/patchwork-lite documentation built on May 26, 2019, 6:31 a.m.