subfunctions_copynumbers: A number of subfunctions used within patchwork.copynumbers().

Description Usage Arguments Author(s) See Also

Description

A number of subfunctions used within patchwork.copynumbers(). These functions are identical in patchworkCG package, so should that package be installed before patchwork or vice versa you will get a non-consequential message saying:

The following object(s) are masked from 'package:patchworkCG':

chrom_ucsc, deChrom_ucsc, is.autosome, weightedMean, weightedMedian

Usage

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weightedMedian(data,weights)
weightedMean(data,weights)
is.autosome(vector)
deChrom_ucsc(data)
chrom_ucsc(data)
assignAI(snp_chr,snp_pos,snp_min,snp_max,seg_chr,seg_start,seg_end)

Arguments

data

Object to be handled by the internal function.

weights

Weights to be applied.

vector

The segs objects chr column.

snp_chr

Chromosome.

snp_pos

Position.

snp_min

Lesser allele amount in single position.

snp_max

Greater allele amount in single position.

seg_chr

Segments chromosome.

seg_start

Start position of segment.

seg_end

End position of segment.

Author(s)

Markus Mayrhofer, [email protected]
Sebastian DiLorenzo, [email protected]

See Also

patchwork.copynumbers


xu-chang/patchwork-lite documentation built on March 19, 2018, 3:09 a.m.