patchwork.smoothing: patchwork smoothing function
In xu-chang/patchwork-lite: Allele-specific Copy Number Analysis of whole genome data
Description
Usage
Arguments
Author(s)
See Also
Description
Applies smoothing by averaging kb segments.
Usage
1
patchwork.smoothing(data,normaldata=NULL,reference=NULL,chroms)
Arguments
data
data object generated after patchwork.GCNorm().
normaldata
Default is NULL, generated and used if you have supplied normal.bam to patchwork.plot.
reference
Default is NULL, used if you have supplied reference argument to patchwork.plot.
chroms
chroms is an object generated from pile.alleles.RData's alf\$achr attribute.
Author(s)
Markus Mayrhofer, markus.mayrhofer@medsci.uu.se
Sebastian DiLorenzo, sebastian.dilorenzo@medsci.uu.se
See Also
xu-chang/patchwork-lite documentation built on May 26, 2019, 6:31 a.m.
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Description Usage Arguments Author(s) See Also
Description
Applies smoothing by averaging kb segments.
Usage
1 | patchwork.smoothing(data,normaldata=NULL,reference=NULL,chroms)
|
Arguments
data |
data object generated after patchwork.GCNorm(). |
normaldata |
Default is NULL, generated and used if you have supplied normal.bam to patchwork.plot. |
reference |
Default is NULL, used if you have supplied reference argument to patchwork.plot. |
chroms |
chroms is an object generated from pile.alleles.RData's alf\$achr attribute. |
Author(s)
Markus Mayrhofer, markus.mayrhofer@medsci.uu.se Sebastian DiLorenzo, sebastian.dilorenzo@medsci.uu.se
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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