Man pages for yangjl/huskeR
Genomic and Genetic analysis Pipeline on HPC

convert_gbs2plink'Change gbs hmp to plink format'
plot_mht'manhattan plot'
plot_stack'Stacking plot with 10 maize chromosomes'
run_aspera'Run Aspera Connect to download from SRA.'
run_bismark'Run array Bismark job on farm'
run_bwamem'Run BWA-mem job on farm'
run_fastq_qc'Run fastq QC.'
run_fq_dump'Run fastq-dump.'
run_GATK'Run GATK array jobs on HPC'
run_GBSv2'Run TASSEL GBSv2 on slurm-based HPC'
run_gctb'Run GCTB in a wrapper developed by Jinliang Yang Lab at...
run_gemma'Run serial gemma jobs on slurm-based HPC'
run_GenSel4'Run GenSel on slurm-based HPC'
run_kallisto'Run kallisto quant.'
run_ldak'Set up aspera code in a job shell'
run_Rcode'Run array job of R codes'
run_VCAP'Run VCAP array jobs on HPC'
set_array_job'Set up array job on farm'
set_slurm_job'Set up one farm job'
yangjl/huskeR documentation built on March 4, 2019, 8:28 p.m.