Description Usage Arguments Details Value Examples
Run this 'seqtk fqchk -q 20' for all your fastq files.
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df |
Data.frame with fq and out columns. fq is the path of your fastq files and out is the path of your output file. |
method |
Method for QC, "seqtk" or "FastQC" only. |
q |
Default=20. Note:use -q0 to get the distribution of all quality values |
email |
Your email address that farm will email to once the job was done/failed. |
runinfo |
Parameters specify the array job partition information.
A vector of c(FALSE, "bigmemh", "1"): 1) run or not, default=FALSE
2) -p partition name, default=bigmemh and 3) –cpus, default=1.
It will pass to |
genomesize |
Maize genome size, default=2500000000. |
dependency: seqtk version 1.0-r82-dirty
return A batch of shell scripts.
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