plot_stack: 'Stacking plot with 10 maize chromosomes'

In yangjl/huskeR: Genomic and Genetic analysis Pipeline on HPC

Description

Stacking plot with 10 maize chromosomes

Usage

plot_stack(df, df2, chrlen = "data/ZmB73_RefGen_v2.length",
  centcsv = NULL, plotcol = "Dm", dorescale = FALSE,
  cols = list("red", rep(c("slateblue", "cyan4"), 5), "#ff7373"), ...)

Arguments

df	An input data.frame, with columns of chr and pos.
chrlen	The chr length file, tab delimited.
centcsv	Centeromere file, csv.
plotcol	The column name to plot.
dorescale	Whether to do rescale or not. Default=FALSE.
cols	A list of cols, cols[[1]], cent box; cols[[2]], chr; cols[[3]], highlight.
...	Other parameters will pass to points().

Value

return a plot.

yangjl/huskeR documentation built on Sept. 2, 2021, 5:38 a.m.