Files in yangjl/huskeR
Genomic and Genetic analysis Pipeline on HPC
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/convert_gbs2bed.R
R/convert_gbs2plink.R
R/plot_cor.R
R/plot_mht.R
R/plot_mht_ellipse.R
R/plot_stack.R
R/run_GATK.R
R/run_GBSv2.R
R/run_GenSel4.R
R/run_Rcode.R
R/run_VCAP.R
R/run_aspera.R
R/run_bismark.R
R/run_bwamem.R
R/run_fastq_qc.R
R/run_fq_dump.R
R/run_gctb.R
R/run_gemma.R
R/run_kallisto.R
R/set_jobs.R
README.md
_config.yml
bin/DESeq2/DESeq2.single.trt.R
bin/DESeq2/README.md
bin/DESeq2/example.R
bin/LICENSE
bin/README.md
bin/VCF/vcf2AC.pl
bin/bwa.filter/samparser.bwa.pl
bin/fasta/fasta.scan.pl
bin/fasta/pattern.search.pl
bin/gsnap.sam.parser/README.txt
bin/gsnap.sam.parser/samparser.gsnap.pl
bin/trimming/trimmomatic.PE.LT.sh
huskeR.Rproj
man/convert_gbs2plink.Rd
man/plot_mht.Rd
man/plot_stack.Rd
man/run_GATK.Rd
man/run_GBSv2.Rd
man/run_GenSel4.Rd
man/run_Rcode.Rd
man/run_VCAP.Rd
man/run_aspera.Rd
man/run_bismark.Rd
man/run_bwamem.Rd
man/run_fastq_qc.Rd
man/run_fq_dump.Rd
man/run_gctb.Rd
man/run_gemma.Rd
man/run_kallisto.Rd
man/run_ldak.Rd
man/set_array_job.Rd
man/set_slurm_job.Rd
test/A.1_test_functions.Rmd
test/A.1_test_functions.nb.html
test/A.2_test_aspera.Rmd
test/A.2_test_aspera.nb.html
test/A.3_test_fq_dump.Rmd
test/A.3_test_fq_dump.nb.html
test/A.4_test_vcap.Rmd
test/A.4_test_vcap.nb.html
test/slurm-script/run_gatk_1.sh
test/slurm-script/run_gatk_array.sh
test/slurm-script/run_test_1.sh
test/slurm-script/run_test_array.sh
