In yangjl/huskeR: Genomic and Genetic analysis Pipeline on HPC

knitr::opts_knit$set(root.dir=normalizePath('../'))
knitr::opts_knit$set(warnings = TRUE, include=TRUE, echo=TRUE)
library("huskeR")

Test run_aspera

#?run_aspera

inputdf <- data.frame(SRR=paste0("SRR", 1:11), sid=1:11)

run_aspera(sradf=inputdf, maxspeed = "100m", outdir = ".", cmdno = 5,
  email = NULL, runinfo=c(FALSE, "bigmemh", 5, "5G", "16:00:00") )

yangjl/huskeR documentation built on Sept. 2, 2021, 5:38 a.m.