In yangjl/huskeR: Genomic and Genetic analysis Pipeline on HPC
knitr::opts_knit$set(root.dir=normalizePath('../'))
knitr::opts_knit$set(warnings = TRUE, include=TRUE, echo=TRUE)
library("huskeR")
Test run_aspera
#?run_aspera
inputdf <- data.frame(sra=paste0("SRR", 1:11, ".sra"), sid=1:11)
run_fq_dump(inputdf, dumppath="largedata/", rmsra = FALSE, gzip = FALSE, email = NULL,
slurmsh = "slurm-script/run_dump_", runinfo = c(FALSE, "bigmemh", 5, "5G", "16:00:00"))
yangjl/huskeR documentation built on Sept. 2, 2021, 5:38 a.m.
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knitr::opts_knit$set(root.dir=normalizePath('../')) knitr::opts_knit$set(warnings = TRUE, include=TRUE, echo=TRUE) library("huskeR")
Test run_aspera
#?run_aspera inputdf <- data.frame(sra=paste0("SRR", 1:11, ".sra"), sid=1:11) run_fq_dump(inputdf, dumppath="largedata/", rmsra = FALSE, gzip = FALSE, email = NULL, slurmsh = "slurm-script/run_dump_", runinfo = c(FALSE, "bigmemh", 5, "5G", "16:00:00"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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