yanjunzan/GBSA: Genotype imputation and QTL mapping with ultra low coverage sequencing in pedigree

This is a R package assigning genotypes to F2 offspring based on high-coverage F0 and low-coverage F2 data. 1.Input: A pedigree, a vcf file contains all individual, and a matrix with id, sex, phenotypes. Details on how to prepare vcf file can be found at link... Pipeline used in our study is publickly avaiable at ... 2.Output: A genotype file that can be directly imported to Rqtl for downstream analysis, such as linkage map construction, QTL mapping. 3.Tutorial: A detailed tutorial can be found at github with following link:

Getting started

Package details

AuthorYanjun Zan, Thibaut Payen, Örjan carlborg
MaintainerYanjun Zan <[email protected]>,Thibaut Payen <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
yanjunzan/GBSA documentation built on May 14, 2019, 4:05 a.m.