This is a R package assigning genotypes to F2 offspring based on high-coverage F0 and low-coverage F2 data. 1.Input: A pedigree, a vcf file contains all individual, and a matrix with id, sex, phenotypes. Details on how to prepare vcf file can be found at link... Pipeline used in our study is publickly avaiable at ... 2.Output: A genotype file that can be directly imported to Rqtl for downstream analysis, such as linkage map construction, QTL mapping. 3.Tutorial: A detailed tutorial can be found at github with following link:
|Author||Yanjun Zan, Thibaut Payen, Örjan carlborg|
|Maintainer||Yanjun Zan <[email protected]>,Thibaut Payen <[email protected]>|
|Package repository||View on GitHub|
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