yanjunzan/GBSA: Genotype imputation and QTL mapping with ultra low coverage sequencing in pedigree
This is a R package assigning genotypes to F2 offspring based on high-coverage F0 and low-coverage F2 data. 1.Input: A pedigree, a vcf file contains all individual, and a matrix with id, sex, phenotypes. Details on how to prepare vcf file can be found at link... Pipeline used in our study is publickly avaiable at ... 2.Output: A genotype file that can be directly imported to Rqtl for downstream analysis, such as linkage map construction, QTL mapping. 3.Tutorial: A detailed tutorial can be found at github with following link:
Getting started
Browse package contents
Package details |
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| Author | Yanjun Zan, Thibaut Payen, Örjan carlborg |
| Maintainer | Yanjun Zan <yanjunzan@gmail.com>,Thibaut Payen <thibaut.payen@gmail.com> |
| License | GPL(>=2) |
| Version | 0.1.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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