tracing_physical: This function directly work on the intermediated files and...

In yanjunzan/GBSA: Genotype imputation and QTL mapping with ultra low coverage sequencing in pedigree

Usage

tracing_physical(input,bin,chr.len,cut)

Arguments

input	input a data frame with genotype on individuals, this is the out put from read
bin	size of the bin
chr.len	length of the current chrommsome
chr.len	below this threshold, NA is inferred

Value

return a vector of the averaged values

Note

Yanjun Zan, Thibaut Payen

References

Yanjun Zan, Thibaut Payen, Leif Andersson, Paul B. Siegel and <c3><96>rjan Carlborg;Whole-genome QTL mapping in experimental pedigrees from outbred founders utilizing low coverage individual based sequencing 2018

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

yanjunzan/GBSA documentation built on May 14, 2019, 4:05 a.m.