Extract_co_all_chr: Extract the number of genotype swith ,which is supposed to...

Usage Arguments Value Author(s) References

Usage

1
Extract_co_all_chr(chromosome = chr,id_all = id_all,all_vcf = all_vcf,gap=3e6,filter=T)

Arguments

id_all

the Id of all the individuals after TIGER run

filter

if the double recombination within a certain distance(gap) should be filtered

all_vcf

links to the TIGER output

chromosome

all the chromsomes in TIGER run

gap

genotype swithing twich within this distance will be filtered out

Value

co

A list contain number of double genotype swich from chromsome 1 to N, and their sum for all the individuals

Author(s)

Yanjun Zan, Thibaut Payen

References

Yanjun Zan, Thibaut Payen, Mette Lillie Leif Andersson, Paul B. Siegel and Örjan Carlborg;Whole-genome QTL mapping in experimental pedigrees from outbred founders utilizing low coverage individual based sequencing 2018


yanjunzan/TD documentation built on May 18, 2019, 3:40 a.m.