Extract_co_all_chr: Extract the number of genotype swith ,which is supposed to...

In yanjunzan/TD: This is a R package processing output from TIGER pipeline.

Usage

Extract_co_all_chr(chromosome = chr,id_all = id_all,all_vcf = all_vcf,gap=3e6,filter=T)

Arguments

id_all	the Id of all the individuals after TIGER run
filter	if the double recombination within a certain distance(gap) should be filtered
all_vcf	links to the TIGER output
chromosome	all the chromsomes in TIGER run
gap	genotype swithing twich within this distance will be filtered out

Value

co	A list contain number of double genotype swich from chromsome 1 to N, and their sum for all the individuals

Author(s)

Yanjun Zan, Thibaut Payen

References

Yanjun Zan, Thibaut Payen, Mette Lillie Leif Andersson, Paul B. Siegel and Örjan Carlborg;Whole-genome QTL mapping in experimental pedigrees from outbred founders utilizing low coverage individual based sequencing 2018

yanjunzan/TD documentation built on May 18, 2019, 3:40 a.m.