Usage Arguments Value Author(s) References
1 | wrap_get_density(inputfile,binsize,cut=T,chr.match,cutoff=10)
|
inputfile |
A txt input file for TIGER pipeline, usually strat with chr and pos followed by Alleles from one line, allele call,and alleles from another line,and corresponding allele call |
binsize |
The size of the genomic bins |
cut |
If the bins with too few markers should be discarded |
chr.match |
a file matching Contig names to chromsome, |
cutoff |
if the number of markers in a bin is smaller than cutoff, this bin would be discarded |
return a vector with number of markers for this input file.
Yanjun Zan, Thibaut Payen
Yanjun Zan, Thibaut Payen, Mette Lillie Leif Andersson, Paul B. Siegel and Örjan Carlborg;Whole-genome QTL mapping in experimental pedigrees from outbred founders utilizing low coverage individual based sequencing 2018
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