correct.range: Updates the range of the flowFrame object after a...

In yannabraham/cytoCore: extending flowCore for CyTOF data analysis

Description

Following transformation or filtering the range columns in parameters may not reflect the current range anymore. Correct.range() will update the range to the current set of values in each of the columns of the exprs slot of the flowFrame

Usage

correct.range(ff)

Arguments

ff	a flowFrame object

Value

a flowFrame object with updated parameters

Author(s)

Yann Abraham

Examples

require(flowCore)

ff <- read.FCS(system.file("extdata","Staurosporine_cd4+_H05.fcs",package="cytoCore"))

channels <- list(CyTOF=c('Time','Cell_length'),
     DNA=c('DNA-1','DNA-2'),
     phenotypic=c('CD3','CD45','CD4','CD20','CD33','CD123','CD14','HLA-DR','IgM','CD7'),
     functional=c('pNFkB','pp38','pStat5','pAkt','pStat1','pSHP2','pZap70','pStat3','pSlp76','pBtk','pPlcg2','pErk','pLat','pS6'),
     barcode=c('BC1','BC2','BC3','BC4','BC5','BC6','BC7')
)

cf <- make.cytoFrame(ff,channels)
cf <- correct.range(cf)

yannabraham/cytoCore documentation built on May 4, 2019, 2:29 p.m.