MapClustersCor: Maps query clusters to reference clusters using correlation

Description Usage Arguments Value

View source: R/mapping.R

Description

Maps query clusters to reference clusters using correlation

Usage

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MapClustersCor(query.data, query.clusters, train.data, train.clusters,
  genes.use = NULL, metric = "pearson")

Arguments

query.data

Query gene expression matrix

query.clusters

Factor of query clusters

train.data

Reference gene expression matrix

train.clusters

Factor of reference clusters

genes.use

Genes to use for classification

metric

Metric to use (either pearson or cosine)

Value

List of reference and query cluster means and cluster correlations


yanwu2014/cellMapper documentation built on Nov. 14, 2019, 5:04 a.m.