SummarizeKNN: Summarize cell classification by group

Description Usage Arguments Value

View source: R/mapping.R

Description

Summarize cell classification by group

Usage

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SummarizeKNN(cell.mapped.ident, query.ident, ident.thresh = 0,
  assign.cells = T, min.ident.frac = 0.05)

Arguments

cell.mapped.ident

Mapped cell type probabilities

query.ident

Either a list or a factor of cell type identities for the query dataset

ident.thresh

Filter out cells that don't map to a reference identity

assign.cells

Assigns each cell to a single reference group

min.ident.frac

Filter out reference identities

Value

A reference groups x query groups matrix of probabilities


yanwu2014/cellMapper documentation built on Nov. 14, 2019, 5:04 a.m.