SummarizeKNN: Summarize cell classification by group

In yanwu2014/cellMapper: A simple kNN Classifier for single cell gene expression datasets

Summarize cell classification by group

Description

Summarize cell classification by group

Usage

SummarizeKNN(cell.mapped.ident, query.ident, ident.thresh = 0,
  assign.cells = T, min.ident.frac = 0.05)

Arguments

cell.mapped.ident	Mapped cell type probabilities
query.ident	Either a list or a factor of cell type identities for the query dataset
ident.thresh	Filter out cells that don't map to a reference identity
assign.cells	Assigns each cell to a single reference group
min.ident.frac	Filter out reference identities

Value

A reference groups x query groups matrix of probabilities

yanwu2014/cellMapper documentation built on Aug. 24, 2023, 2:26 a.m.