MapKNN: Map cells to a reference dataset using a kNN classifier

In yanwu2014/cellMapper: A simple kNN Classifier for single cell gene expression datasets

Map cells to a reference dataset using a kNN classifier

Description

Map cells to a reference dataset using a kNN classifier

Usage

MapKNN(query.norm.counts, train.knn, genes.use = NULL, use.pca = T,
  k = 30)

Arguments

query.norm.counts	Query gene expression matrix
train.knn	Output of TrainKNN
genes.use	Genes to use for classification
use.pca	Whether or not to project to PCs first
k	Number of neighbors

Value

Matrix of cell type probabilities

yanwu2014/cellMapper documentation built on Aug. 24, 2023, 2:26 a.m.