MapKNN | R Documentation |
Map cells to a reference dataset using a kNN classifier
MapKNN(query.norm.counts, train.knn, genes.use = NULL, use.pca = T,
k = 30)
query.norm.counts |
Query gene expression matrix |
train.knn |
Output of TrainKNN |
genes.use |
Genes to use for classification |
use.pca |
Whether or not to project to PCs first |
k |
Number of neighbors |
Matrix of cell type probabilities
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