TrainKNN: Runs PCA on the training dataset

In yanwu2014/cellMapper: A simple kNN Classifier for single cell gene expression datasets

Runs PCA on the training dataset

Description

Runs PCA on the training dataset

Usage

TrainKNN(norm.counts, genes.use, ident, pcs.use = 40)

Arguments

norm.counts	Normalized gene expression matrix, should be genes x samples
genes.use	Genes to use for PCA
ident	Cell type identity
pcs.use	Number of PCs to calculate

Value

List of gene expression, cell identity, PCA embeddings, PCA loadings

yanwu2014/cellMapper documentation built on Aug. 24, 2023, 2:26 a.m.