TrainKNN | R Documentation |
Runs PCA on the training dataset
TrainKNN(norm.counts, genes.use, ident, pcs.use = 40)
norm.counts |
Normalized gene expression matrix, should be genes x samples |
genes.use |
Genes to use for PCA |
ident |
Cell type identity |
pcs.use |
Number of PCs to calculate |
List of gene expression, cell identity, PCA embeddings, PCA loadings
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