riger.gene.comparison.datasets: RIGER gene score comparison for two datasets

In yavorska/AchillesPackage: Achilles Application Functions

Description

Generate a plot comparing the LFC values of each shRNA of a given gene within entities for two different datasets.

Usage

riger.gene.comparison.datasets(object1, object2, object1Name = "Dataset1",
  object2Name = "Dataset2", geneName = "MDM4", entityName = "all",
  percentage = 5, plotName = "Dataset Comparisson Plot", ...)

Arguments

object1	A RIGER type object, see vignette for details.
object2	A RIGER type object, see vignette for details.
object1Name	A character string giving the name of object1.
object2Name	A character string giving the name of object2.
geneName	A character string giving the name of the gene in question, e.g. "MDM4".
entityName	A character string giving the name of the entity in question, e.g. "BONE". Can also be "all".
percentage	The percentage of scores which should be considered toxic or enriching.
plotName	A character string gicing the name of the final plot.
...	Any other additions to the ggplot. One can change the theme, plot name, etc. as desired.

Value

A ggplot object.

Examples

data("Achilles2.0")
data("Achilles2.4")

riger.gene.comparison.datasets(object1 = Achilles2.0, object2 = Achilles2.4,
                               object1Name = "Ach1", object2Name = "Ach2",
                               geneName = "MDM4",entityName = "Colon",
                               percentage = 1, plotName = "Comparing RIGER scores")

yavorska/AchillesPackage documentation built on May 4, 2019, 2:31 p.m.