riger.gene.comparison: RIGER gene score comparison

In yavorska/AchillesPackage: Achilles Application Functions

Description

Generate a plot comparing the LFC values of each shRNA of a given gene within entities. The entity scores are calculated based on the mean or median of the relevant cell line scores.

Usage

riger.gene.comparison(object, geneName, entityName = "all", ...)

Arguments

object	A RIGER type object, see vignette for details.
geneName	A character string giving the name of the gene in question, e.g. "MDM4".
entityName	A character string giving the name of the entity in question, e.g. "BONE". Can also be "all".
...	Any other additions to the ggplot. One can change the theme, plot name, etc. as desired.

Value

A ggplot object.

Examples

data("Achilles2.4")

riger.gene.comparison(object = Achilles2.4, geneName = "MDM4", entityName = "all")

yavorska/AchillesPackage documentation built on May 4, 2019, 2:31 p.m.