variation.within.entity: Variation within entity

In yavorska/AchillesPackage: Achilles Application Functions

Description

Generate a plot comparing the LFC values of each shRNA of a given gene within the cell lines of a chosen entity.

Usage

variation.within.entity(object, entityName, geneName, ...)

Arguments

object	An RNAi object.
entityName	A character string giving the name of the entity in question, e.g. "BONE".
geneName	A character string giving the name of the gene in question, e.g. "MDM4".
...	Any other additions to the ggplot. One can change the theme, plot name, etc. as desired.

Value

A ggplot object.

Examples

data("Achilles2.4_Data")
data("Achilles2.4_annotation")

RNAiObject <- new(Class = "RNAi", genes = Achilles2.4_Data$Gene,
                  sequences = Achilles2.4_Data$Name,
                  cancers = colnames(Achilles2.4_Data)[-(1:2)],
                  cancersP53 = Achilles2.4_annotation,
                  values = Achilles2.4_Data[,-(1:2)])

variation.within.entity(object = RNAiObject, entityName = "BONE", geneName = "MDM4")

yavorska/AchillesPackage documentation built on May 4, 2019, 2:31 p.m.