seqGen: Generate Sequences
In ygu427/seqAlign: sequence alignment

Description Usage Arguments Details Value Author(s)

View source: R/seqGen.R

This function is used to generate multiple sequences. Type of sequence could be DNA sequence, RNA sequence and Protein sequence.

1	seqGen(length,sampleNum,type="protein",dir="",out.file="")

`length`	lenth of sequences, can be scalar or vector
`sampleNum`	number of sequences need to be generated
`type`	specify the type of sequences
`dir`	setting up the working directory for output
`out.file`	file name for output

It requires package "seqinr" to write a fasta file. If user set up the working directory and name the output file, then a fasta file contains the generated sequences would be saved. If no user-determined output file name, then there will not be a fasta file saved.

seqL

the generated sequences, saved as a list object

Yu Gu Maintainer: Yu Gu <yu_gu@urmc.rochester.edu>

ygu427/seqAlign documentation built on May 4, 2019, 2:33 p.m.