pairAlign: Pairwise Sequence Alignment
In ygu427/seqAlign: sequence alignment
Description
Usage
Arguments
Details
Value
Author(s)
Description
A common user-interface for pairwise sequence alignment. A user determined parameter input window would pop-up. User can determine using either of Needleman-Wunsch or Smith-Waterman algorithm or using both of them.
Usage
1
Arguments
method
algorithm chosen for alignment
dir
setting up the working directory for output
out.file
file name for output
Details
This function requires package "seqinr" and "biomaRt" and "Biostrings"
Value
align
a list object contains the alignment results
Author(s)
Yu Gu
Maintainer: Yu Gu <yu_gu@urmc.rochester.edu>
ygu427/seqAlign documentation built on May 4, 2019, 2:33 p.m.
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Description Usage Arguments Details Value Author(s)
Description
A common user-interface for pairwise sequence alignment. A user determined parameter input window would pop-up. User can determine using either of Needleman-Wunsch or Smith-Waterman algorithm or using both of them.
Usage
1 |
Arguments
method |
algorithm chosen for alignment |
dir |
setting up the working directory for output |
out.file |
file name for output |
Details
This function requires package "seqinr" and "biomaRt" and "Biostrings"
Value
align |
a list object contains the alignment results |
Author(s)
Yu Gu
Maintainer: Yu Gu <yu_gu@urmc.rochester.edu>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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