msaAlign: Multiple Sequence Alignment

Description Usage Arguments Details Value Author(s) References

View source: R/msaAlign.R

Description

Use package "msa"

Usage

1
msaAlign(seq, method = c("ClustalW", "ClustalOmega", "Muscle"), dir = "", out.file = "")

Arguments

seq

input sequences

method

algorithm chosen for alignment

dir

setting up the working directory for output

out.file

file name for output

Details

Use the package "msa"

Value

align

a MsaAAMultipleAlignment object for MSA

Author(s)

Yu Gu

Maintainer: Yu Gu <yu_gu@urmc.rochester.edu>

References

Bodenhofer, Ulrich, Enrico Bonatesta, Christoph Horejs-Kainrath, and Sepp Hochreiter. "msa: an R package for multiple sequence alignment." Bioinformatics (2015): btv494.


ygu427/seqAlign documentation built on May 4, 2019, 2:33 p.m.