per.unipbset.truncate: Probe-level data truncation to a fixed number of probes per...

In yilinwu123/precision1: PaiREd miCrorna sImulation on Study desIgn for mOlecular classificatioN

Probe-level data truncation to a fixed number of probes per unique probe-set

Description

Truncate probe-level dataset so that it has a fixed number of probes per unique probe-set. We are safe to do so if the variation among replicates for the same probe is small.

Usage

per.unipbset.truncate(data, pbset.id = NULL, num.per.unipbset = 10)

Arguments

data	probe-level dataset. The dataset must have rows as probes and columns as samples.
pbset.id	a vector of unique probe-set names. By default, pbset.id = NULL for it to be the row names of the dataset.
num.per.unipbset	number of probes for each unique probe-set to be truncated to. By default, num.per.unipbset = 10.

Value

truncated probe-level data

Examples

uhdata.pl.p5 <- per.unipbset.truncate(data = uhdata.pl,
num.per.unipbset = 5)

yilinwu123/precision1 documentation built on June 28, 2022, 2:53 a.m.