assign-marker_table: Assign marker_table to 'object'

In yiluheihei/microbiomeMarker: microbiome biomarker analysis toolkit

Assign marker_table to object

Description

This function replace the marker_table slot of object with value.

Usage

marker_table(object) <- value

Arguments

object	a microbiomeMarker object to modify.
value	new value to replace the marker_table slot of object. Either a marker_table-class, a data.frame that can be coerced into marker_table-class.

Value

a microbiomeMarker object.

Examples

data(enterotypes_arumugam)
mm <- run_limma_voom(
    enterotypes_arumugam,
    "Enterotype",
    contrast = c("Enterotype 3", "Enterotype 2"),
    pvalue_cutoff = 0.1,
    p_adjust = "fdr"
)
mm_marker <- marker_table(mm)
mm_marker
marker_table(mm) <- mm_marker[1:2, ]
marker_table(mm)

yiluheihei/microbiomeMarker documentation built on Nov. 5, 2023, 7:19 a.m.