plot_postHocTest: 'postHocTest' plot
In yiluheihei/microbiomeMarker: microbiome biomarker analysis toolkit

plot_postHocTest

R Documentation

`postHocTest` plot

Description

Visualize the result of post-hoc test using ggplot2

Usage

plot_postHocTest(pht, feature, step_increase = 0.12)

Arguments

`pht`	a `postHocTest` object
`feature`	character, to plot the post-toc test result of this feature
`step_increase`	numeric vector with the increase in fraction of total height for every additional comparison to minimize overlap, default `0.12`.

Value

a ggplot object

Examples

data(enterotypes_arumugam)
ps <- phyloseq::subset_samples(
    enterotypes_arumugam,
    Enterotype %in% c("Enterotype 3", "Enterotype 2", "Enterotype 1")
) %>%
    phyloseq::subset_taxa(Phylum == "Bacteroidetes")
pht <- run_posthoc_test(ps, group = "Enterotype")
plot_postHocTest(pht, feature = "p__Bacteroidetes|g__Alistipes")

yiluheihei/microbiomeMarker documentation built on Nov. 5, 2023, 7:19 a.m.