postHocTest: Build postHocTest object

In yiluheihei/microbiomeMarker: microbiome biomarker analysis toolkit

Build postHocTest object

Description

This function is used for create postHocTest object, and is only used for developers.

Usage

postHocTest(
  result,
  abundance,
  conf_level = 0.95,
  method = "tukey",
  method_str = paste("Posthoc multiple comparisons of means: ", method)
)

Arguments

result	a IRanges::SimpleDFrameList object.
abundance	data.frame.
conf_level	numeric, confidence level.
method	character, method for posthoc test.
method_str	character, illustrates which method is used for posthoc test.

Value

a postHocTest object.

Examples

require(IRanges)
pht <- postHocTest(
    result = DataFrameList(
        featureA = DataFrame(
            comparisons = c("group2-group1", 
                "group3-group1", 
                "group3-group2"),
            diff_mean = runif(3),
            pvalue = rep(0.01, 3),
            ci_lower = rep(0.01, 3),
            ci_upper = rep(0.011, 3)
        ),
        featureB = DataFrame(
            comparisons = c("group2-group1", 
                "group3-group1", 
                "group3-group2"),
            diff_mean = runif(3),
            pvalue = rep(0.01, 3),
            ci_lower = rep(0.01, 3),
            ci_upper = rep(0.011, 3)
        )
    ),
    abundance = data.frame(
        featureA = runif(3),
        featureB = runif(3),
        group = c("group1", "group2", "grou3")
    )
)
pht

yiluheihei/microbiomeMarker documentation built on Nov. 5, 2023, 7:19 a.m.