main_3hgbqg <- function(path_to_diagram_retina){
#parameters
LAMBDA_var <- 0.001 #Thin plate spline smoothing. Lambda=0 would be interpolation.
RESOLUTION_var <- 500 #Plot width in pixels
#defining coordinates
IJ <-data.frame(maxX = 1429,
maxY = -85,
minX = 108,
minY = -989,
deltaX = (1429-108)/21,
deltaY = (989-85)/14)
#assembling the retina object
my_retina <- retina_object(
path = path_to_diagram_retina,
#Eye Measurements from dissection
ED = 5, #Eye diameter (mm)
AL = 5, #Eye axial length (mm)
LD = 2, #Eye lens diameter (mm)
#Stereology Parameters
height = 30 ,# height of the counting frame in microns
width = 30, # width of the counting frame in microns
#Plotting Parameters
lambda = LAMBDA_var, #see fields::Tps for more information
extrapolate = TRUE , #Predicts densities to the equator.
spatial_res = RESOLUTION_var,
rotation_ccw = -90, # when set to -90 degrees, the rotation is unaltered from the measured orientation.
plot_suppress=TRUE,
#ImageJ Datapoint Calibration Measurements
IJcoords = IJ
)
#plot
retinaplot(my_retina)
}
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