main_raxp91 <- function(path_to_diagram_retina){
#parameters
LAMBDA_var <- 0.1 #Thin plate spline smoothing. Lambda=0 would be interpolation.
RESOLUTION_var <- 500 #Plot width in pixels
#defining coordinates
IJ <-data.frame(maxX = 1016,
maxY = -48,
minX = 25,
minY = -923,
deltaX = (1016-25)/18,
deltaY = (923-48)/17)
#assembling the retina object
my_retina <- retina_object(
path = path_to_diagram_retina,
#Eye Measurements from dissection
ED = 8.5, #Eye diameter (mm)
AL = 7, #Eye axial length (mm)
LD = 4.5, #Eye lens diameter (mm)
#Stereology Parameters
height = 45 ,# height of the counting frame in microns
width = 45, # width of the counting frame in microns
#Plotting Parameters
lambda = LAMBDA_var, #see fields::Tps for more information
extrapolate = TRUE , #Predicts densities to the equator.
spatial_res = RESOLUTION_var,
rotation_ccw = -90, # when set to -90 degrees, the rotation is unaltered from the measured orientation.
plot_suppress=TRUE,
#ImageJ Datapoint Calibration Measurements
IJcoords = IJ)
#plot
retinaplot(my_retina, lambda=0.001, polynomial_m= 2, rotation=30)
}
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